Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMFVNTVIAFIIIFGTLVFFHELGHLLLAQRAGILCREFAIGFGPKIFSFKKNETVYTIRLLPVGGFVRMAGEDPEMIEVKPGYTVGLLFNKEDQVEKVIINQKEKYPDALVIEVETADLEHDMKITGYEQGKEDELSSFTVSETSFFIVDGEEVQIAPYNRQFGSKPVWQRIKAIAAGPIMNFILAYVILVMLGLIQGVPSNEPMLGQLTDNGRAAEAGLKEGDYIQSINGEKMRSWTDIVSAVKENPEKEMDVAVKRDNKTLHISVTPEAVKDENKKTIGRFGSYAPTEKGVLSAVAYGATSTVDVTKAILTNLSKLVTGQFKLDMLSGPVGIYDMTDQVAKTGIVNLFQFAAFLSINLGIVNLLPIPALDGGRLLFLFIEAIRGKPINREKEAFVVFIGVAFLMLLMLVVTWNDIQRLFL
1LCY Chain:A ((269-322))----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AHRAGLRPGDVILAIGEQMVQNAEDVYEAVRT--QSQLAVQIRRGRETLTLYVTPE--------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1LCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 173 -29474 -170.37 -545.81
target 2D structure prediction score : 0.78
Monomeric hydrophicity matching model chain A : 0.48

3D Compatibility (PKB) : -170.37
2D Compatibility (Sec. Struct. Predict.) : 0.78
1D Compatibility (Hydrophobicity) : 0.48
QMean score : 0.736

(partial model without unconserved sides chains):
PDB file : Tito_1LCY.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1LCY-query.scw
PDB file : Tito_Scwrl_1LCY.pdb: