Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEEKYETNGYDTSIVYDYKEYPDVKYGRCDNCDYTL-FKS---SVKSGIFLRECRRCGMKKSI
1VD4 Chain:A ((13-48))------------------------ASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTE---


General information:
TITO was launched using:
RESULT:

Template: 1VD4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 69 -9097 -131.83 -284.27
target 2D structure prediction score : 0.34
Monomeric hydrophicity matching model chain A : 0.58

3D Compatibility (PKB) : -131.83
2D Compatibility (Sec. Struct. Predict.) : 0.34
1D Compatibility (Hydrophobicity) : 0.58
QMean score : 0.335

(partial model without unconserved sides chains):
PDB file : Tito_1VD4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1VD4-query.scw
PDB file : Tito_Scwrl_1VD4.pdb: