Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKQETPITLHVKSVIEDDGNQEVIEFRTTGFYYVKQNKVYLSYYEEHDLGKVKTIVKVSEGEVLVMRSGA-VKMNQRFVTGASTIAKYKMSFGELELKTSTKSIQSDLD-EEKGRISIAYDMHVGDEQEHLHNMTITYEGGTHA
2KD2 Chain:A ((109-175))-----------------------------------------------------LRVVLEKDTMDVWCNGQKMETAGEFVDDGTE----------THFSVGNHDCYIKAVSSGKRKEGIIHTLIVDNREIP--------------


General information:
TITO was launched using:
RESULT:

Template: 2KD2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 218 5284 24.24 81.28
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain A : 0.58

3D Compatibility (PKB) : 24.24
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.58
QMean score : 0.399

(partial model without unconserved sides chains):
PDB file : Tito_2KD2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2KD2-query.scw
PDB file : Tito_Scwrl_2KD2.pdb: