Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLARHFGAGRKAHSRAVATLKADIQAWHPAGIQTPKPRCESDVFARI----------GHTSHPSTRKSRVGPGASEAPLA
4LDD Chain:B ((88-183))
-------------------LMKQIPIWLPLGVADQKTYSFDSTTAAIMLASYTITHF---TNPLVRVNRLGPGIPDHPL-
General information:
TITO was launched using:
RESULT:
Template:
4LDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2758 for 189 contacts (14.6/contact) +
2D Compatibility (PS) -5012 + (NN) -3342 + (LL) 1628
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -6368.0 ( -33.69 by residue)
QMean score : 0.642
(partial model without unconserved sides chains):
PDB file :
Tito_4LDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LDD-query.scw
PDB file :
Tito_Scwrl_4LDD.pdb
: