Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSPGSRRASPQSAREVVELDRDEAMRLLASVDHGRVVFTRAALPAIRPVNHLVVDGRVIGRTR---LTAKVSVAVRSSADA--GVVVAYEADDLDPRRRTGWSVVVTGLATEVSDPEQVARYQRLLHPWVNMAMDTVVAIEPEIVTGIRIVA-DSRTP
4HHP Chain:A ((135-222))
--------------------------------------------------------REAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPV---------WAIGTGKVAT----PQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNART-
General information:
TITO was launched using:
RESULT:
Template:
4HHP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27119 for 457 contacts (-59.3/contact) +
2D Compatibility (PS) -8607 + (NN) -1808 + (LL) 4064
1D Compatibility (HY) -2800 + (ID) 1550
Total energy: -37820.0 ( -82.76 by residue)
QMean score : 0.313
(partial model without unconserved sides chains):
PDB file :
Tito_4HHP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HHP-query.scw
PDB file :
Tito_Scwrl_4HHP.pdb
: