Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSNANFSILVDFAAGGLVLASVLIVWRRDLRAIVRLLAWQGAALAAIPLLRGIRDNDRALIAVGIAVLALRALVLPWLLARAVGAEAAAQREATPLVNTASSLLITAGLTLTAFAITQPVVNLEPGVTINAVPAAFAVVLIALFVMTTRLHAVSQAAGFLMLDNGIAATAFLLTAGVPLIVELGASLDVLFAVIVIGVLTGRLRRIFGDADLDKLRELRD |
2JO1 Chain:A ((16-39)) | ------------------------------------------------------------------------------------------------------------------------------LQIGGLVIAGILFILGILIVLSRR---------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2JO1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -7833 for 93 contacts (-84.2/contact) +
2D Compatibility (PS) -2482 + (NN) -1437 + (LL) 18052
1D Compatibility (HY) -3600 + (ID) 150
Total energy: 2550.0 ( 27.42 by residue)
QMean score : -0.153
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