Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSVYKHAPSRVRLRQTRSTVVKGRSGSLSWRRVRTGDLGLAVWGGREEYRAVKPGTPGIQPKGDMMTVTVVDAGPGRVSRSVEVAAPAAELFAIVADPRRHRELDGSGTVRGNIKVPAKLVVGSKFSTKMKLFGLPYRITSRVTALKPNELVEWSH---PLG-HRWRWEFESLSPTLTRVTETFDYHAAGAIKNGLKFYEMTGFAKSNAAGIEATLAKLSDQYARGRA |
2D4R Chain:A ((3-146)) | ----------------------------------------------------------------------------EVRAERYIPAPPERVYRLAKDLEGLKPYLKE--VESLEVVARE-GARTRSRWVAVAMGKKVRWLEEEEWDDENLRNRFFSPEGDFDRYEGTWVFLPEGE-GTRVVLTLTYELTIPIF--GGLLRKL-VQKLMQENVESLLKGLEERVLAAS- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2D4R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -23995 for 1019 contacts (-23.5/contact) +
2D Compatibility (PS) -15144 + (NN) -3574 + (LL) 3424
1D Compatibility (HY) -3200 + (ID) 1050
Total energy: -43539.0 ( -42.73 by residue)
QMean score : 0.343
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