Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKNQNRIRNRWELIT---CGLGGHVTYAPDDAALAARLRASTGLGEVWRCLRCGDFALGGPQGRGAPEDAPLIMRGKALRQAIIIRALGVERLVRALVLALAAWAVWEFRGARGAIQATLDRDLPVLRAAGFKVDQMTVIHALEKALAAKPSTLALITGMLAAYAVLQAVEGVGLWLLKRWGEYFAVVATSIFLPLEVHDLAKGITTTRVVTFSINVAAVVYLLISKRLFGVRGGRKAYDVERRGEQLLDLERAAMLT |
4LKA Chain:A ((29-88)) | --KEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALR-----WQCIECKTCSSCRDQGKNA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LKA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -7729 for 284 contacts (-27.2/contact) +
2D Compatibility (PS) -6517 + (NN) -6720 + (LL) 19376
1D Compatibility (HY) -2400 + (ID) 1000
Total energy: -4990.0 ( -17.57 by residue)
QMean score : 0.117
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