Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVTVGVICAIPQELAYLRGVL-VDAKRQQVAQILFDSGQLDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIADRVVQHDFGLLTDERLRPYQPGHIPFIEPTERLGYPVDPAVIDRVKHRLDGFTLAPLSTAAGGGGRQPRIYYGTILTGDQYLHCERTRNRLHHELGGMAVEMEGGAVAQICASFDIPWLVIRALSDLAGADSGVDFNRFVGEVAASSARVLLRLLPVLTAC
4OJT Chain:A ((1-231))
MGQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLN-----ALAKKIANE-----------------QHIALKEGVIASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL---
General information:
TITO was launched using:
RESULT:
Template:
4OJT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -216103 for 2075 contacts (-104.1/contact) +
2D Compatibility (PS) -24449 + (NN) -7053 + (LL) 272
1D Compatibility (HY) -20400 + (ID) 3500
Total energy: -271233.0 ( -130.71 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_4OJT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OJT-query.scw
PDB file :
Tito_Scwrl_4OJT.pdb
: