Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASDFGPRIADLVEVAATRLPEAPALVVTADRIAI-------SHRDLARLVDELAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPITEQRVRSQAAGARVVLI-DADGPHDR---AEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPNPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIA-SLLATLASGGAVSL-PARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERSATEPSGRKPAALRFIRSCSAPLTAQAALALQTEFAAPVVCAFGMTEATHQVTTTQIEGIDQTETPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVGEIWLRGTTVVRGYLGDPTITAANFT-DGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPHQLYGEAVAAVIVPRESAPPTREELVQFCRER-LAAFEIPASFQEASGLPHTAKGSLDRRAVAERFGHSV |
| 1MD9 Chain:A ((40-527)) | ------------------------------DRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIV-AGEAEEFLPLE-DLHTEP---VKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL---IEREKVTITALVPPLAMVWMDAASSRRDDL--SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTR-----LDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKA-AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALRE------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1MD9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -252090 for 4141 contacts (-60.9/contact) +
2D Compatibility (PS) -51322 + (NN) -29073 + (LL) 3216
1D Compatibility (HY) -24400 + (ID) 7400
Total energy: -361069.0 ( -87.19 by residue)
QMean score : 0.429
|
|
|