Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVPAKKKQQQGERSRESILDATERLMATKGYAATSISDIRDACGLAPSSIYWHFGSKEGVLAAMMERGAQRFFAAIPTWDEAHGPVEQRSERQLTELVSLQSQHPDFLRLFYLLSMERSQDPAVAAVVRRVRNTAIARFRDSITHLLPSDIPPGK-ADLVVAELTAFAVALSDGVYFAGHLEPDTTDVERMYRRLRQALEALIPVLLEET
4JNN Chain:A ((4-161))
--------------ARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEALRRNVKLAFDRQVA--ELHTIADARE--RLVRLVELQLPTPGLLRDEWSVWLQVWTESTLNPKIRDLYNDAYDRWYQTIAMTIRTGQKQGVFRDQDADELATRLSALIDGL-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4JNN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58026 for 1095 contacts (-53.0/contact) +
2D Compatibility (PS) -17251 + (NN) -7494 + (LL) 4336
1D Compatibility (HY) -6800 + (ID) 2200
Total energy: -87435.0 ( -79.85 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_4JNN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JNN-query.scw
PDB file :
Tito_Scwrl_4JNN.pdb
: