Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLSDRDLRAEISSGRLGIDPFDDT-LVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPV--------DGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSEHPYGSSRAGSKYQGQRGPTPSRSYQNFIRST
1XS4 Chain:A ((3-189))
--LCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLAFYNSGKLPLALRPGMLIGALSFEPLSGPAVRPY-NRREDAKYRNQQGAVASR---------
General information:
TITO was launched using:
RESULT:
Template:
1XS4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76384 for 1239 contacts (-61.6/contact) +
2D Compatibility (PS) -19314 + (NN) -11133 + (LL) 776
1D Compatibility (HY) -12000 + (ID) 4000
Total energy: -122055.0 ( -98.51 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_1XS4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XS4-query.scw
PDB file :
Tito_Scwrl_1XS4.pdb
: