Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTIGTRKRVAVVTGASSGIGEATARTLAAQGFHVVAVARRADRITALANQIGGTA-----IVADVTD----DAAVEALARALSRVDVLVNNAGGAKGLQFVADADLEHWRWMWDTNVLGTLRVTRALLPKLIDSGDGLIVTVTSIAAIEVYDGGAGYTAAKHAQGALHRTLRGELLGKPVRLTEIAPGAVETEF-SLVRFDGDQQRADAVYAGMTPLVAADVAEVIGFVATRPSHVNLDQIVIRPRDQASASRRATHPVR
2JAH Chain:A ((8-246))
--------KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNA-GIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRS-KGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQRISQIRKLQAQDIAEAVRYAVTAPHHATVHEIFIRPTDQ------------
General information:
TITO was launched using:
RESULT:
Template:
2JAH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147284 for 1954 contacts (-75.4/contact) +
2D Compatibility (PS) -24865 + (NN) -8501 + (LL) 1040
1D Compatibility (HY) -12800 + (ID) 4750
Total energy: -197160.0 ( -100.90 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_2JAH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JAH-query.scw
PDB file :
Tito_Scwrl_2JAH.pdb
: