Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MMTLKVAIGPQNAFVLRQGIRREYVLVIVALCGIADGALIAAGVGGFAALIHAHPNMTLVARFGGAAFLIGYALLAARNAWRPSGLVPSESGPAALIGVVQMCLVVTFLNPHVYLDTVVLIGALANEESDLRWFFGAGAWAASVVWFAVLGFSAGRLQPFFATPAAWRILDALVAVTMIGVAVVVLVTSPSVPTANVALII |
2LIF Chain:A ((175-189)) | -------------------------------------------------------------------------------------------------SIFLLALLSCITVPV----------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LIF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -5354 for 51 contacts (-105.0/contact) +
2D Compatibility (PS) -1614 + (NN) -1730 + (LL) 16152
1D Compatibility (HY) -1200 + (ID) 100
Total energy: 6154.0 ( 120.67 by residue)
QMean score : -0.215
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