Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQTTQSPALIASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHIAANRLTVTCEETFP-SSSPDEIAHILVLHSEFDGGFTSEVRGVFTYRVNKAGLITNMRGYWNLDMMTFGNQE
3M8C Chain:A ((12-116))
-------------QRYVAALNAGDLDGIVALFADDATVEDPVG---SEPR----SGTAAIREFYANSL---KLPLAVELTQEVRAVANEAAFAFTVSFEYQGRKTV-VAPINHFRFNGAGKVVSMRALF-----------
General information:
TITO was launched using:
RESULT:
Template:
3M8C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54770 for 680 contacts (-80.5/contact) +
2D Compatibility (PS) -11171 + (NN) -3441 + (LL) 2040
1D Compatibility (HY) -6400 + (ID) 1600
Total energy: -75342.0 ( -110.80 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_3M8C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M8C-query.scw
PDB file :
Tito_Scwrl_3M8C.pdb
: