Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVHAW
2LGJ Chain:A ((1-191))
MAEPLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFKVHKKSGAEVVTGRLAGTSVVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVASALGTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVPTIVEQAADATELLIAQGLEPAQNTVHAW
General information:
TITO was launched using:
RESULT:
Template:
2LGJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72695 for 1514 contacts (-48.0/contact) +
2D Compatibility (PS) -20102 + (NN) -3651 + (LL) 0
1D Compatibility (HY) -22400 + (ID) 7850
Total energy: -126698.0 ( -83.68 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_2LGJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LGJ-query.scw
PDB file :
Tito_Scwrl_2LGJ.pdb
: