Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVTDDYLANNVDYASGFKGPLPMPPSKHIAIVACMDARLD--VYRMLGIKEGEAHVIRNAGCVVTDDVIRSLAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAIQDETGIRPTWSPESYPDAV-------EDVRQSLRRIEVNPFVTKHTSLRGFVFDVATGKLNEVTP
1G5C Chain:A ((2-163))
--IIKDILRENQDFR--FRDLSDLKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIVDDGVIRSAAVAIYALGDNEIIIVGHTDCGMARL-DEDLIVSRMRELGVEEEVIENFSIDVLNPVGDEEENVIEGVKRLKSSPLIPESIGVHGLIIDINTGRL-----
General information:
TITO was launched using:
RESULT:
Template:
1G5C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99251 for 1011 contacts (-98.2/contact) +
2D Compatibility (PS) -16134 + (NN) -2905 + (LL) 240
1D Compatibility (HY) -13600 + (ID) 2750
Total energy: -134400.0 ( -132.94 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_1G5C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G5C-query.scw
PDB file :
Tito_Scwrl_1G5C.pdb
: