Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLA----GVTQL----AGLARYPQPMAPAAAAEHAGMALPARDQIVRLIADLDRPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSW----PDPPGLVAASNRSALARIAMVRAALPAGAASLDAGDFAAMSAAAFDRNWVAGLVG
1DAD Chain:A ((4-194))
---YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRA-LEQQADWVLVEGAGGWFTPLSD-TFTFADWVTQEQLPVILVVGVKLGCINHAMLT-----AQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRM-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1DAD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89645 for 1347 contacts (-66.6/contact) +
2D Compatibility (PS) -19592 + (NN) -11096 + (LL) 3812
1D Compatibility (HY) -7600 + (ID) 3100
Total energy: -127221.0 ( -94.45 by residue)
QMean score : 0.291
(partial model without unconserved sides chains):
PDB file :
Tito_1DAD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DAD-query.scw
PDB file :
Tito_Scwrl_1DAD.pdb
: