Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAYKTVVVGTDGSDSSMRAVDRAAQIA---GADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKER-----AHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTT
3TNJ Chain:A ((4-145))
-SVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLD--------YGTAIPLD-------TETTYDAMLDVEKQKLSQIGNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSH---------LGSTANSVLHYAKCDVLAV---
General information:
TITO was launched using:
RESULT:
Template:
3TNJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46029 for 800 contacts (-57.5/contact) +
2D Compatibility (PS) -12679 + (NN) -3308 + (LL) 1604
1D Compatibility (HY) -6400 + (ID) 1750
Total energy: -68562.0 ( -85.70 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_3TNJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TNJ-query.scw
PDB file :
Tito_Scwrl_3TNJ.pdb
: