Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRYPLGEALLALYRWRGPLINAG---VGGHGYTYLLGAEANRFVF-ANADAFSWSQTFESLVPVDGPTALIVSDGADHRRRRSVVAPGLRHHHVQRYVATMVSNIDTVIDGWQPGQRLDIYQELRSAVRRSTAESLFGQRLAVHSDFLGEQLQPLLDLTRRPPQVMRLQQRVNSPGWRRAMAARKRIDDLIDAQIADARTAPRPDDH----MLTTLISGCSEEGT-TLSDNEIRDSIVSLITAGYETTSGALAWAIYALLTVPGTWESAASEVARVLG-GRVPAADDLSALTYLNGVVHETLRLYSPGVISARRVLRDLWFDGHRIRAGRLLIFSAYVTHRLPEIWPEPTEFRPLRWD-PNAADYRKPAPHEFIPFSGGLHRCIGAVMATTEMTVILARLVARAMLQLPAQRTHRIRAANFAALRPWPGLTVEIRKSAPAQ |
| 2VKU Chain:A ((30-412)) | -----------MQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPIFGEG--VVFDASPERRKEMLHNAALRGEQMKGHAATIEDQVRRMIADWGEAGEIDLLDFFAELTIYTSSACLIGKKFRDQLD--GRFAKLYHELERGTDPLAYVDPYLPIESFRRRDEARNGLVALV-ADIMNGRIANPPTDKSDRDMLDVLIAVKAETGTPRFSADEITGMFISMMFAGHHTSSGTASWTLIELMRHRDAYAAVIDELDELYGDGRSVSFHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWT--WIPFGAGRHRCVGAAFAIMQIKAIFSVLL---------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VKU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -185312 for 2954 contacts (-62.7/contact) +
2D Compatibility (PS) -39832 + (NN) -16602 + (LL) 5240
1D Compatibility (HY) -23200 + (ID) 5250
Total energy: -264956.0 ( -89.69 by residue)
QMean score : 0.340
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