Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAGDQELELRFDVPLYTLAEASRYLVVPRATLATWADGYERRPANAPAVQGQPIITALPHPTGSHARLPFVGIAEAYVLNAFRRAGVPMQRIRPSLDWLIKNVGPHALASQDLCTDGAEVLWRFAERSGEGSPDDLVVRGLIVPRSGQYVFKEIVEHYLQQISFADDNLASMIRLPQYGDANVVLDPRRGYGQPVFDGSGVRVADVLGPLRAGATFQAVADDYG-VTPDQLRDALDAIAA |
2GA1 Chain:A ((5-91)) | -------------------------------------------------------------------------------------------------------------------------------------------------------KTQLLEVIAALPEELVDQALNYV--QMLQNPIQITPGVCGGQARIRNTRIPVWTLVAYRQQGAPDKELLANYPGLTAEDLSAAWHYYEQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GA1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -34755 for 502 contacts (-69.2/contact) +
2D Compatibility (PS) -9341 + (NN) -5062 + (LL) 9900
1D Compatibility (HY) -4000 + (ID) 650
Total energy: -43908.0 ( -87.47 by residue)
QMean score : 0.383
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