Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQVPSPSEAAT
2DFT Chain:A ((2-166))
-APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGN---------DRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRL----------
General information:
TITO was launched using:
RESULT:
Template:
2DFT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98268 for 1243 contacts (-79.1/contact) +
2D Compatibility (PS) -17941 + (NN) -10596 + (LL) 1016
1D Compatibility (HY) -18000 + (ID) 7800
Total energy: -151589.0 ( -121.95 by residue)
QMean score : 0.866
(partial model without unconserved sides chains):
PDB file :
Tito_2DFT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DFT-query.scw
PDB file :
Tito_Scwrl_2DFT.pdb
: