Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLRWITAGESHGRALVAVVEGMVAGVHVTSADIADQLARRRLGYGRGARMTFERDAVTVLSGIRHGSTLGGPIAIEIGNTEWPKWETVMAADPVDPAELADVARNAPLTRPRPGHADYAGMLKYGFDDARPVLERASARETAARVAAGTVARAFLRQALGVEVLSHVISIGA-SAPYEGPPPRAEDL------PAIDA-SPVRAYDKAAEADMIAQIEAAKKDGDTLGGVVEAVALGLPVGLGSFTSGDHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDGVVRSTNRAGGLEGGMTNGQPLRVRAAMKPISTVPRALATVDLATGDEAVAIHQRSDVCAVPAAGVVVETMVALVLARAALEKFGGDSLAETQRNIAAYQRSVADREAPAARVSG |
1R53 Chain:A ((7-363)) | LFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRP------------DRVEIQSGTEFGKTLGTPIAMMIKN-----------------------------------------------------------RETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGEIKMNRDSFDPEFQHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGE--PCFDKLEAMLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFY------RTKTNNSGGVQGGISNGENIYFSVPFKSV-----------------------RHDPAVTPRAIPIVEAMTALVLADALL---------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1R53.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175003 for 2173 contacts (-80.5/contact) +
2D Compatibility (PS) -29419 + (NN) -14827 + (LL) 7452
1D Compatibility (HY) -16800 + (ID) 5400
Total energy: -233997.0 ( -107.68 by residue)
QMean score : 0.472
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