Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTG--------SGDDIAAQTRDALRRIEIALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVGSAVADRNSGAGPKDPSPAGG
3M4S Chain:A ((26-146))
-----TVVASPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAAL-PKGALVEVECIA-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3M4S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50422 for 877 contacts (-57.5/contact) +
2D Compatibility (PS) -12882 + (NN) -5837 + (LL) 220
1D Compatibility (HY) -10000 + (ID) 1700
Total energy: -80621.0 ( -91.93 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_3M4S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M4S-query.scw
PDB file :
Tito_Scwrl_3M4S.pdb
: