Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAELTETSPETPETTEAIRAVEAFLNALQNEDFDTVDAALGDDLVYENVGFSRIRGGRRTATLLRRMQGRVGFE-VKIHRIGADGAAVLTERTDALIIGPL--RVQFWVCGVFEVDDGRITLWRDYFDVYDMFKGLLRGLVALVVPSLKATL
4XDW Chain:A ((26-136))
------------------KIVLEFMDALTSNDAAKLIEYFAEDTMYQNMPLPPAYGRDAVEQTLAGFFTVVSVDAVETFHIGSSNGLVYTERVDVLRALPTGKSYNFSILGVFQLTEGKITGWRDYFDL-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4XDW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54088 for 745 contacts (-72.6/contact) +
2D Compatibility (PS) -12077 + (NN) -5718 + (LL) 3392
1D Compatibility (HY) -8400 + (ID) 1700
Total energy: -78591.0 ( -105.49 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_4XDW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XDW-query.scw
PDB file :
Tito_Scwrl_4XDW.pdb
: