Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEPDVAGAPASKPEPASTGAASAAQLSGYSRVLLKLGGEMFGGGQ-VGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT
2BNF Chain:A ((9-240))
-----------------------------YKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLN-VCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLIT-
General information:
TITO was launched using:
RESULT:
Template:
2BNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -204391 for 1953 contacts (-104.7/contact) +
2D Compatibility (PS) -25698 + (NN) -14397 + (LL) 1132
1D Compatibility (HY) -22000 + (ID) 5250
Total energy: -270604.0 ( -138.56 by residue)
QMean score : 0.620
(partial model without unconserved sides chains):
PDB file :
Tito_2BNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BNF-query.scw
PDB file :
Tito_Scwrl_2BNF.pdb
: