Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITLDHVTKQYKSSAR--PALDDINVKIDKGEFVFLIGPSGSGKSTFMRLLLAAETPTSGDVRVSKFHVNKLRGRHVPKLRQ-VIGCVFQDFRLLQQKTVYDNVAFALEVIGKRTDAIN-----RVVPEVLETVGLSGK-ANRLPDELSGGEQQRVAIARAFVNRPLVLLADEPTGNLDPETSRDIMDLLERINRT-GTTVLMATHDHHIVDSMRQRVVELSLGRLVRDEQRGVYGMDR
1F3O Chain:A ((2-228))
-IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPL--IFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEK--------
General information:
TITO was launched using:
RESULT:
Template:
1F3O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158325 for 1737 contacts (-91.1/contact) +
2D Compatibility (PS) -22951 + (NN) -6900 + (LL) 700
1D Compatibility (HY) -18400 + (ID) 4650
Total energy: -210526.0 ( -121.20 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_1F3O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F3O-query.scw
PDB file :
Tito_Scwrl_1F3O.pdb
: