Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVVAEGAYPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSSTGAEWVGDRP
4AP8 Chain:A ((2-132))
----VEEKSKDVINFTAEKLSVDEVSQLVISPLCGAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKICSDIRQKWPVKHIAVFHRLGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLKAKVPIWKKEI------------
General information:
TITO was launched using:
RESULT:
Template:
4AP8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98448 for 987 contacts (-99.7/contact) +
2D Compatibility (PS) -14460 + (NN) -9311 + (LL) 596
1D Compatibility (HY) -10000 + (ID) 2500
Total energy: -134123.0 ( -135.89 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_4AP8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AP8-query.scw
PDB file :
Tito_Scwrl_4AP8.pdb
: