Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAGRSERLVITGAGGQLGSHLTAQAAREGRDMLAL-------TSSQWDITDPAAAERIIR--HGDVVINCAAYTDVDGAESNEAVAYAVNATGPQHLARACARVGARLIHVSTDYVFDGDFGGAEPRPYEPTDETAPQGVYARSKLAGEQAVLAAFPEAAVVRTAWVY--TGGTGKDFVAVM-RRLAAGHGRVDVVDDQTGSPTYVADLAEALLALA-----DAGVRGRVLHAANEGVVSRFGQARAVFEECGADPQRVRPVSS-----AQFPRPAPRSSYSALSSRQWALAGLTPLRHWRSALATALAAPANSTSIDRRLPSTRD |
| 2YDX Chain:A ((2-267)) | ----NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFD----GTNP-PYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGNEQ-MTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNA-------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -128859 for 1994 contacts (-64.6/contact) +
2D Compatibility (PS) -27367 + (NN) -15250 + (LL) 3276
1D Compatibility (HY) -14800 + (ID) 3900
Total energy: -186900.0 ( -93.73 by residue)
QMean score : 0.536
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