Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGS-----VFVACRLRPLTLDDVDFTLAVLGGNDLRGL-----NLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG
4YEI Chain:A ((46-234))
--ELTNASLTGADLSYANLHHANLSRANLRSADLRNANLSHANLSGANLEEANLEAANLRGADLHEANLSGADLQEANLTQANLKDANLSDANLEQADLAGADLQGAVLDGANLHGANLNNANLSEAMLTRANLEQADLSGARTTGARLDDASLHGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLA--
General information:
TITO was launched using:
RESULT:
Template:
4YEI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -171465 for 1576 contacts (-108.8/contact) +
2D Compatibility (PS) -18107 + (NN) 2967 + (LL) -16
1D Compatibility (HY) -6800 + (ID) 4100
Total energy: -197521.0 ( -125.33 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_4YEI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YEI-query.scw
PDB file :
Tito_Scwrl_4YEI.pdb
: