Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPDDQPAVPDVDRLARSMLLLHGDHHDHNDSPEQHRTCGSWSKSRDFADDPQRAAAVREASRAERDRYLTSGLQPVDCRFCHVTVTVKRLGPGHTAVQWNTEASRRCAYFTELRARGGDSARTRSCPRLTDSIEHAVAEGYLEHHDPNR |
1VD4 Chain:A ((36-56)) | -----------------------------------------------------------------------MTGTFRCTFCHTEVEEDESAM--------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VD4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2921 for 68 contacts (-43.0/contact) +
2D Compatibility (PS) -2104 + (NN) 200 + (LL) 6380
1D Compatibility (HY) -400 + (ID) 250
Total energy: 905.0 ( 13.31 by residue)
QMean score : 0.205
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