Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQLPRVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNAP---VSVSATTTDGLGLTGRGEGLAAIATALVVSLR
3F0F Chain:A ((25-178))
-----RIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVV---
General information:
TITO was launched using:
RESULT:
Template:
3F0F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137521 for 1278 contacts (-107.6/contact) +
2D Compatibility (PS) -16625 + (NN) -13301 + (LL) 532
1D Compatibility (HY) -8000 + (ID) 3150
Total energy: -178065.0 ( -139.33 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_3F0F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F0F-query.scw
PDB file :
Tito_Scwrl_3F0F.pdb
: