Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYEGPKTKFHALMQEQIHNEFTAAQQYVAIAVYFDSEDLPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVRNQFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFMQWFLQEQIEEVALMATLVRVADRAGANL---FELENFVAREVDVAPAASGAPHAAGGRL
1VLG Chain:A ((19-174))
---------KVRKALNDQLNREIYSSYLYLSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQ-------------------
General information:
TITO was launched using:
RESULT:
Template:
1VLG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54441 for 1105 contacts (-49.3/contact) +
2D Compatibility (PS) -17242 + (NN) -14688 + (LL) 1136
1D Compatibility (HY) -12000 + (ID) 2000
Total energy: -99235.0 ( -89.81 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_1VLG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VLG-query.scw
PDB file :
Tito_Scwrl_1VLG.pdb
: