Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGLFGKRKSRATRRAEARAIKARAKLEAKLSAKNEARRIKAAQRAESKALKAQLKARRDSDRAALKVAEAELKVAREGKLLSPTRIRRLLTVSRLLAPILTPVIYRAAMAARGLIDQRRADQLGVPLAQIGRFSGHGARLSARVGGAERSLRMVQEKKPKDVETKQFVSAVTNRLTDLSAAVAAAEHMP---AKRRRTAHSAISSQLDGIEADLMARLGLT |
2C5K Chain:T ((40-93)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------EIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRFDR----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2C5K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -7310 for 236 contacts (-31.0/contact) +
2D Compatibility (PS) -5432 + (NN) -1371 + (LL) 14340
1D Compatibility (HY) -3200 + (ID) 450
Total energy: -3423.0 ( -14.50 by residue)
QMean score : 0.628
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