Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN
1QUW Chain:A ((1-104))
-------ATMTLTDANF-QQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVL----
General information:
TITO was launched using:
RESULT:
Template:
1QUW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70141 for 756 contacts (-92.8/contact) +
2D Compatibility (PS) -11434 + (NN) -7999 + (LL) 316
1D Compatibility (HY) -13600 + (ID) 3000
Total energy: -105858.0 ( -140.02 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_1QUW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QUW-query.scw
PDB file :
Tito_Scwrl_1QUW.pdb
: