Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTFARLAAGLCICAIASQANAWSQPTHKNIVKDALAFMNSSYATEEMRQAYRFYVSAAGSEAQAGEILGQAAFDVDDFKDTRLGGWWVGYEHAPLWGAASGIVNYTSYWHFLNLARDGDSHGNPHGGYDYRYHKVDGGIADVDWYAMVYLYNRELKREDFDTTEAHYRQGT---RSDWQEHYGDFQTAAFQPIDNLATYWFEQFRAAPSLQTIGYALHATGDVAQPHH---VWITSANGHSSWEGWVDDHYASEKLNDPAAVANLVGRYDPSKSIRDLLTQTGQVAYARPEPLYDTSYETRLRVAKELIPESIALTVTVLTKGANSFDAPTAL |
1GYG Chain:A ((92-165)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------DTGESQIRKFSALARYEWQR--GNYKQATFY---------------------LGEAMHYFGDIDTPYHPANVTAVDSAGHVKFETFAEERKEQYKINTVGCKTNEDFYADILKNKDFNAWSKEYARGFAKTGKSIYYSHASMSHSWDDWDYAAKVTLANSQKGTAGYIYRFLH |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GYG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 7455 for 332 contacts (22.5/contact) +
2D Compatibility (PS) -7296 + (NN) -1130 + (LL) 11772
1D Compatibility (HY) -2400 + (ID) 1150
Total energy: 7251.0 ( 21.84 by residue)
QMean score : 0.101
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