Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKATYSMLSQVTFPLAEAGYYVVPVALADETFRQNGLTSAGDVHQVSPAKLREIYGADAAL-YVTVSDYGTRYMVISSATIVTASAKLVDL-RSGTTLWTGSATASSEEGNGGNNGGLVGMLITAAVKQIINSSVEDAGYPIAGMTSARLLSAGQPGGLLYGPRSPRYGSD |
1PVR Chain:A ((243-306)) | --------------------------------RKNGVAAPSATSQLSNSALGGIFGATHRLIYGAKDDSGQRYLAWSGHSARVGAAR--DMARAGVSIPEIMQAGGWTNVNIVMNYIRNLDSETGAMVRLLED-------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PVR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -4213 for 259 contacts (-16.3/contact) +
2D Compatibility (PS) -6495 + (NN) 985 + (LL) 4772
1D Compatibility (HY) -2000 + (ID) 1000
Total energy: -7951.0 ( -30.70 by residue)
QMean score : 0.128
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