Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAKVDTRRLVGRLLLVTVLMFAFGFALVPLYDVMCRALGINGKTAGSAYSGEQQVDVGREVKVQFMTSNNIDMVWEFRSAGDQLVVHPGAVNQMVFYARNPSDKPMTAQAIPSIAPAEAAAYFHKTECFCFTQQVLQPGESIEMPVRFIVDRDLPKDVRHVTLAYTLFDITARKPPVPVAGR
2Q9R Chain:A ((21-48))
------------------QLFATALCQRMLPNYQLFSEVCEFGDPAVLSTALELLWQSLYDPKLKFNIDVHLQRLEDNTPEPADFEAYGVYPAMDAVVAISTLLGAIQGKIEEDIVNISKLSSSTVANYIEAISDVDLVDEALDDFVFAHEVMEEEKELQNSLLEIIEENPKITAELVKGLRKD
General information:
TITO was launched using:
RESULT:
Template:
2Q9R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6235 for 108 contacts (-57.7/contact) +
2D Compatibility (PS) -2973 + (NN) -1919 + (LL) 1696
1D Compatibility (HY) -2000 + (ID) 150
Total energy: -11581.0 ( -107.23 by residue)
QMean score : 0.205
(partial model without unconserved sides chains):
PDB file :
Tito_2Q9R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Q9R-query.scw
PDB file :
Tito_Scwrl_2Q9R.pdb
: