Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLDWTCKHHADLTLKELYALLQLRTEVFVVEQKCP-YQEVDGLDLVGDTHHLMAWRDGQLLAYLRLLDPVRHEGQVVIGRVVSSSAARGQGLGHQLMERALQAAERLWLDTPVYLSA---QAHLQAYYGRYGFVAVTE-----------VYLEDDIPHIGMRRA
1MK4 Chain:A ((3-154))
---------IRTITSSDYEMVTSVLNEWWGGRQLKEKLPRLFFEHF-Q-DTSFITSEHNSMTGFLIGFQSQSDPETAYIHFSGVHPDFRKMQIGKQLYDVFIETVKQRGC-TRVKCVTSPVNKVSIAYHTKLGFDIEKGTKTVNGISVFANYDGPGQDRVLFVKN
General information:
TITO was launched using:
RESULT:
Template:
1MK4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80365 for 940 contacts (-85.5/contact) +
2D Compatibility (PS) -14757 + (NN) -3589 + (LL) 692
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -101219.0 ( -107.68 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_1MK4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MK4-query.scw
PDB file :
Tito_Scwrl_1MK4.pdb
: