Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAIYLAGPDVFRPDAEAHGETLKALCAEFGFVGLY-PLDHALPADIREPAAQAAWIYRANVGLIERADCVLANLEPFRGSEPDSGTAFEVGYALALGKPVYAYLSDAGAYAERLARLAPEWLGEHPGEDRDGWQLEGFGLPLNLMLAVPSRLVAGGPREALRRLAEELGGNA
3EHD Chain:A ((5-107))
-TKIYFAGPLFSQADLRYNAYLVEQIRQLDKTIDLYLPQENAAIND-KSAYADSKMIALADTENVLASDLLVALLD---GPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLNGRVVSSEEDLLEEIKQRL-----------
General information:
TITO was launched using:
RESULT:
Template:
3EHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35759 for 632 contacts (-56.6/contact) +
2D Compatibility (PS) -10937 + (NN) -5455 + (LL) 1656
1D Compatibility (HY) -4800 + (ID) 1550
Total energy: -56845.0 ( -89.94 by residue)
QMean score : 0.324
(partial model without unconserved sides chains):
PDB file :
Tito_3EHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EHD-query.scw
PDB file :
Tito_Scwrl_3EHD.pdb
: