Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLPAMRTGLLCALLGVTAPAWAEYVTVISFGGANKEAQETAFYKPFKSATGNRVVHGSYNGDLAKLKRMVEISHVSWDVVEVEAPELARGCEEGLFEKLDMAKVGDPADFVPGAVQPCG--------VGIFVW-TTLLAYNPGKVAG--SPQGWADFWDVKKFPGKRGLRWGAKYSLEFALMADGVA----PKDVYQTLATPAGVERAFRKLDE-----------LKPYIHWWKSGQDPVRDLADGTVVMSSAYNGRI--AAAQAEKQR------LAMVWSGGVYDFDFWALPVGVWKKQLAEEFIRFASQPEQQKAFAENIAYGPANRKAVGLLDPQVAANLPTAPQNMQNAVGMNVAFWAEHGEALEQRFQNWAKR |
| 4JDF Chain:A ((24-307)) | ---------------------------------------------FEKETGIKVVYDVFDSNEV-LEGKLMAGSTGFDLVVPSAYFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPE----------NLE-KLKSCGVSFLDDPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQ-YINDLANGDICVAIGWAGSVWQASNRAKEAKNGVNVSFSIPKEGAMAWFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAEVRENPGIYPPADVRAKLFTQKVQDPKIDRVRTRAWTKVKS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JDF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -66981 for 1812 contacts (-37.0/contact) +
2D Compatibility (PS) -26323 + (NN) -2105 + (LL) 4212
1D Compatibility (HY) -13200 + (ID) 3350
Total energy: -107747.0 ( -59.46 by residue)
QMean score : 0.248
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