Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLCNVVVLISGSGSNLQALIDSLRDGATPARIRAVISNRADAYGLERARQAGIQTEVLDHKAYADRESFDEALAQRIDAHEPHLVILAGFMRILSADFVRHYQGRLLNIHPSLLPRHKGLHTHQRALEAGDREHGCSVHFVTEELDGGPLVVQAVIPVESQDTPERLARRVHEEEHRIYPLAMRWFAEGRLRLGEQGALLDGQALPATGHQIRTKEIRNA
1C3E Chain:A ((2-208))
-----NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLDGQRLPPQGYA---------
General information:
TITO was launched using:
RESULT:
Template:
1C3E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158103 for 1695 contacts (-93.3/contact) +
2D Compatibility (PS) -23603 + (NN) -15919 + (LL) 1232
1D Compatibility (HY) -22800 + (ID) 6100
Total energy: -225293.0 ( -132.92 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_1C3E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C3E-query.scw
PDB file :
Tito_Scwrl_1C3E.pdb
: