Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDLSTWNLTIP---QGRPAITISTSQLQRDYRSDYFQRTAD--GIRFWVPVNGSHTRNSEFPRSELRETLSSG-RPYNWRYARADNWLEATLRIEAVPSTRRMIIG-QIHSDGSNSGQAAPLVKLLYQLRLDQGRVQALVRERPDDGGTRAYTLMDGIPLGQPFSYRIGVSRSGLLSVSVNGSALEQQLDPQWAYQGLYFKAGLYLQDNRGPSSEGGRATFSELRVSHQ
1UAI Chain:A ((12-197))
--DLTDWKVTLPIGSSGKPS-EIEQPALDTFATAPWFQVNAKCTGVQFRAAVNGVTTSGSGYPRSELREMTDGGEEKASWSATSGTHTMVFREAFNHLPEVKPHLVGAQIH-DGDDD---------VTVFRLEG---TSLYITKGDD--THHKLVTSDYKLNTVFEGKFVVS-GGKIKVYYNGVL---QTTISHTSSGNYFKAGAYTQANCSNSSPCSSSNYGQVSLYKL
General information:
TITO was launched using:
RESULT:
Template:
1UAI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75337 for 1315 contacts (-57.3/contact) +
2D Compatibility (PS) -18499 + (NN) -2241 + (LL) 1224
1D Compatibility (HY) -6800 + (ID) 2900
Total energy: -104553.0 ( -79.51 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_1UAI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UAI-query.scw
PDB file :
Tito_Scwrl_1UAI.pdb
: