Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEVKHSRLIILGSGPAGYTAAVYAARANLKPVVITG-----IQPGGQLTTTTEVDNWPGDVEGLTGPALMTRMQQHAERFDTEIVYDHIHTAELQQRPFTLKGDSGTYTCDALIIATGASAQYLG-MSSEEA---FMGKGVSACATCDGF--FYRNQVVCVVGGGNTAVEEALYLANIAKEVHLIHRRDKLRSEKILQDKLFDKAENGNVHLHWNTTLDEVLGDASG--VTGVRLKSTIDGSTSELSLAGVFIAIGHKPNTDLFQGQLEM-RDGYLRIHGGSEGNATQTSIEGVFAAGDVADHVYRQAITSAGAGCMAALDAEKYLDDH |
| 1VDC Chain:A ((5-324)) | --ETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRAL---SNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGT----TQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VDC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -215538 for 2710 contacts (-79.5/contact) +
2D Compatibility (PS) -33459 + (NN) -12826 + (LL) 352
1D Compatibility (HY) -27200 + (ID) 7300
Total energy: -295971.0 ( -109.21 by residue)
QMean score : 0.526
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