Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLDVFLDFLLGMVLGCLGGLFGIGGGLLAIPALGVIFGLDQQLAQGTALVMVVPNVVLALWRYHQRNRIDPRQAGVLALTGLLCAFLASSVAARIDAARMREAFVIFLLALAGYMFWRLFRRPPQGGATPRYGLPWMGVLGLGAGSLGGLFGVGGGVLATPVLTSVFGLAQVVAQGLALALAAPSTAVALGTYAMHGHVDWRMGIPLALGGLLSISWGVRLAHALPERSLRMAFCAFLALCAVLLLVRG |
1LDF Chain:A ((79-106)) | ------------------------------------------------------------------ACFDKRKVIPFIVSQVAGAFCAAALVYG----------------------------------------------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1LDF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -4629 for 102 contacts (-45.4/contact) +
2D Compatibility (PS) -2844 + (NN) -3479 + (LL) 16936
1D Compatibility (HY) -1600 + (ID) 250
Total energy: 4134.0 ( 40.53 by residue)
QMean score : -0.006
|
|
|