Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKKSLLPLGLAIGLASLAASPLIQASTYTQTKYPIVLAHGMLGFDNILGV-DYWFGIPSALRRDGAQVYVTEVSQL---DTSEVRGEQLLQQVEEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPHKGSDTADFLRQI---PPGSAGEAVLSGLVNSLGALISFLSSGSTGTQNSLGSLESLNSEGAARFNAKYPQ---GIPTSACGEGA--YKVNGVSY--YSWSGSS-------------------PLT---NFLDPSD-AFLGASSLTFKNGTA-NDGLVGTCSSHLGMVIRDNYRMNHLDEVNQVFGLTSLFETSPVSVYRQHANRLKNASL |
| 4LIP Chain:D ((2-316)) | --------------------------DNYAATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGPNGRGEQLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPHRGSEFADFVQGVLAYDPTGLSSTVIAAFVNVFGILTS--SSNNT-NQDALAALKTLTTAQAATYNQNYPSAGLGAPGS-CQTGAPTETVGGNTHLLYSWAGTAIQPTISVFGVTGATDTSTIPLVDPANALDPSTLALFGTGTVMVNRGSGQNDGVVSKCSALYGQVLSTSYKWNHLDEINQLLGVRGANAEDPVAVIRTHANRLK---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LIP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -46965 for 2371 contacts (-19.8/contact) +
2D Compatibility (PS) -29806 + (NN) -7318 + (LL) 2664
1D Compatibility (HY) -23200 + (ID) 6550
Total energy: -111175.0 ( -46.89 by residue)
QMean score : 0.408
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