Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYSLQVEDIH---KRYGSHEVLRGVSLRAGKGDVISIIGSSGSGKSTFLRCVNFLEKPCAGHIRVGDEELRTRPGALGELRAADPRQLQRIRSRLAMVFQHFNLWSHLTVLENVVECPVNVLRMNRDDAVARARHYLAKVGLAEKVERQYPCELSGGQQQRVAIARALAMEPQVMLFDEPTSALDPELVGEVLKVMQQLAEEGRTMVLVTHEMAFARQVSSHVIFLHQGVIEEEGTPDQVFGAPRSERLRQFLAGNLK
2OUK Chain:A ((22-260))
---LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-----------AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKA-HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFLS----
General information:
TITO was launched using:
RESULT:
Template:
2OUK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150618 for 1954 contacts (-77.1/contact) +
2D Compatibility (PS) -25100 + (NN) -9882 + (LL) 876
1D Compatibility (HY) -27200 + (ID) 6500
Total energy: -218424.0 ( -111.78 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_2OUK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OUK-query.scw
PDB file :
Tito_Scwrl_2OUK.pdb
: