Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPRAAVVCGLGSYLPEAVLSNDMLAAELDTSDAWISSRTGVRQRHIAG-DLGSGDLALRAASAALASAGLER--VDAVVLATSTGDFCCPATAPRVAARLGLVGALAFDLSAACTGFVYGLASVGSLISAGLADSALLVGVDTFSHTLDPADRSTRALFGDGAGAVVLRAGDAEEEGALLAFDLGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAVFGQAVTQMSDSVRRVLDRVGWQASDLHHLVPHQANTRILAAVADQLDLPVERVVSNIAEVGNTVAASIPLALAHGLRQGILRDGGNMVLTGFGAGLTWGSVALRWPKIVPTMD
1HND Chain:A ((5-317))------IIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAA---SEEPGIISTHLHADGSYGELLTLP---NADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF--------


General information:
TITO was launched using:
RESULT:

Template: 1HND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -260640 for 2920 contacts (-89.3/contact) +
2D Compatibility (PS) -32059 + (NN) -3497 + (LL) 1216
1D Compatibility (HY) -21600 + (ID) 6350
Total energy: -322930.0 ( -110.59 by residue)
QMean score : 0.513

(partial model without unconserved sides chains):
PDB file : Tito_1HND.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1HND-query.scw
PDB file : Tito_Scwrl_1HND.pdb: