Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASHELDYRILGESMQTVEIELDP-GETVIAEAGAMNYMTGDIRFTARMGDGSDGSLLGKLWSAGKRKLGGESVFMTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFTKRLGAGFFGGEGFILQKLEGDGLVFVHAG------GTLIRRQLN-GETLRVDTGCLVAFTDGIDYDVQLAGGLKSMLFGGEGLLLTTLKGSGTVWLQSLPFSRLAGRIYDATFRAREEVRTNNG
1YOX Chain:A ((95-244))
-------------PGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIA-----------------------EGFILQKLEGD----GLVFVHA--GGTLIRRQLNG--ETLRVDTGCLVAFTDGIDYDVQLAG-----------LLLTTLKGSGTVWLQSLPFSRLAGRIYDATFRAREEVR--------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YOX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87051 for 783 contacts (-111.2/contact) +
2D Compatibility (PS) -13193 + (NN) -6588 + (LL) 4896
1D Compatibility (HY) -10800 + (ID) 1000
Total energy: -113736.0 ( -145.26 by residue)
QMean score : 0.282
(partial model without unconserved sides chains):
PDB file :
Tito_1YOX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YOX-query.scw
PDB file :
Tito_Scwrl_1YOX.pdb
: