Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRKVFSSQAYRHKVVLVSGGCSGIGRALALRFARAGARLAILDLDQAA-LDSLVQHLRDHLGGEALGLRCDVADADAVERAVALAVERFGGIDVLVNNAGITHRGTFAETGLGVFRKVMAVNFFGAVHCTRAALPSLLER-RGQIVVLGSLTGFAPLLYRSAYNASKHALHGLFDTLRMELEGTGVSVTLACPGFTATDLRKNALVGDGSVTRQPVQVLGSQVASPVEVAEAIFQGAARRRRLLVLSNVNWRARLLARFFPRLFEKLLVPRLSGLKPQP
3W8E Chain:A ((3-192))
-----------KGKKAVVTGSTSGIGLAMATELAKAGADVVINGFGQPEDIERERSTLESKFGVKAYYLNADLSDAQATRDFIAKAAEALGGLDILVNNAGIQHTAPIEEFPVDKWNAIIALNLSAVFHGTAAALPIMQKQGWGRIINIASAHGLVASVNKSAYVAAKHGVVGLTKVTALENAGKGITCNAICPGWVRTPL-------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3W8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150590 for 1566 contacts (-96.2/contact) +
2D Compatibility (PS) -20489 + (NN) -10835 + (LL) 7028
1D Compatibility (HY) -8800 + (ID) 3300
Total energy: -186986.0 ( -119.40 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_3W8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W8E-query.scw
PDB file :
Tito_Scwrl_3W8E.pdb
: